Fix/shadow env in container (#646)

* fix: shadow .env file in container to prevent agents from reading secrets

The main agent's container mounts the project root read-only, which
inadvertently exposed the .env file containing API keys. Mount /dev/null
over /workspace/project/.env to shadow it — secrets are already passed
via stdin and never need to be read from disk inside the container.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: adapt .env shadowing and runtime for Apple Container

Apple Container (VirtioFS) only supports directory mounts, not file
mounts. The previous /dev/null host-side mount over .env crashes with
VZErrorDomain "A directory sharing device configuration is invalid".

- Dockerfile: entrypoint now shadows .env via mount --bind inside the
  container, then drops privileges via setpriv to the host UID/GID
- container-runner: main containers skip --user and pass RUN_UID/RUN_GID
  env vars so entrypoint starts as root for mount --bind
- container-runtime: switch to Apple Container CLI (container), fix
  cleanupOrphans to use container list --format json
- Skill: add Dockerfile and container-runner.ts to
  convert-to-apple-container skill (v1.1.0)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: revert src to Docker runtime, keep Apple Container in skill only

The source files should remain Docker-compatible. The Apple Container
adaptations live in the convert-to-apple-container skill and are applied
on demand.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

.claude/skills/convert-to-apple-container/manifest.yaml

@@ -1,12 +1,14 @@
 skill: convert-to-apple-container
-version: 1.0.0
+version: 1.1.0
 description: "Switch container runtime from Docker to Apple Container (macOS)"
 core_version: 0.1.0
 adds: []
 modifies:
   - src/container-runtime.ts
   - src/container-runtime.test.ts
+  - src/container-runner.ts
   - container/build.sh
+  - container/Dockerfile
 structured: {}
 conflicts: []
 depends: []